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Infectious Diseases - Coggle Diagram
Infectious Diseases
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Infection Diagnostics
Bacteria
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NAAT
Streptococcus pneumoniae - pneumoccalurine antigen
Legionella pneumophilia - legionella urine antigen - serogroup 1
H. pylori - rapid urease test, urea breath test, stool antigen test
Neisseria gonorrhoeae - urethral swab PCR
Virus
Usually PCR (NAAT) / serology
NAAT for sensitive, Serological more retrospective
Histopathology of tissue biopsies
Owl's eye of inclusion bodies - CMV, entire nucleus - Hodgkin's lymohoma
Cultures - slow, labour intensive, needs special expertise
Direct fluorescence Ab/microscopy
Stains
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Fungi
KOH/Calcofluor - chitin and cellulose containing structures - fluoresces with polarised light
India ink stain -cryptococcus in CSF
Mucicarmine stain - stains capsule of cryptococcus pink
Gram stain +ve - candida, cryptococcus
Parasites
Giesma stain - visualise blood parasites, malaria, filaria, helminths
Acid fast / safranin stain - stains oocysts red
Serodiagnositics
Hemagglutination and hemagglutination inhibition
Complement fixation test - specific Ab against Ag of interest in patient's serum
ELISA - intensity corresponds to reactivity
Immunochromatographic tests - RSV, dengue, clostridium difficle
Latex agglutination tests
Immunofluorescence - HSV and VSV
Western blot
Infections
Bacterial infections
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Pelvic
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STD (C-HUNT)
Chlamydia trachomatis
Haemophilus ducreyi
Ureaplasma urealyticum
Neisseria gonorrhoeae
Treponema pallidum
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Viral infections
Head
Gingivostomatitis - oral infection, inflammation
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Mycobacterial Infections
Characteristics
Cell wall - lipid-rich, mycolic acid-containing, long-chain glycolipid walls that protect bacteria from lysosomal attack - hydrophobic, bacteria can survive in macrophage
Acid fast stain - cannot use gram stains as cell wall impermeable to basic dyes (ZN stain retains carbol fuschin)
Auramine is most sensitive staining method - fluorescent microscopy - mycolic acid
Bacilli, mycobacterium
Obligate aerobic
Mycobacterium TB
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Pathophysiology
Transmission
Primary lesion (ghon focus) - gray-white inflammatory consolidation
Spread of TB infection - Ghon complex - caseous necrosis of centre of Ghon focus, lymphadenopathy
~ Ranke complex - when Ghon complex undergoes fibrosis and calcification
Progression to overt pulmonary TB disease (from occult TB - more lymphocytes and monocytes migrate to site of infection)
Microbial inhibition by the body
Granulomas
Special type of chronic inflammation - hallmark of host reaction to TB in immunocompetent individuals
Epithelioid hisiocytes (activated macrophages), giant cell, necrosis in the middle
Complication - ceasation (cheeselike, hallmark of TB infection
Cavitation - strong delayed-type hypersensitivity to bacilus
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M. TB, M. bovis, M.microti, M.africanum, M.caprae
Non-TB mycobacterium
Clinical syndromes
Chronic bronchopulmonary disease (in patients with cystic fibrosis)
Lymphadenitis (children) - MAC
Skin and soft tissue manifestations, skeletal infections
Catheter-related infections
Disseinated disease (immunocompromised)
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Communal Pneumonias
Bacterial pneumonias
Typical pathogens
Streptococcus pneumoniae (gram +ve cocci)
Haemophilus influenzae (gram -ve coccobacilus)
Moraxella catarrhalis (gram -ve diplococci)
Diffuse patchy changes, non-productive cough, normal WBC count
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Atypical pathogens (MCL)
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Lobar consolidations, productive cough, leukocytosis
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Complications
Parapneumonic
Uncomplicated - fluid accumulates in pleiral spaces
Complicated - flid accumulated is acidic
Empyema - Streptococcus spp., anaerobes, staph aureus
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Viral pneumonias
Common causes
Influenza, respiratory synctial virus (RSV), adenovirus
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Coronavirus
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Treat with dexamethazone, remdesivir (viral RNA polymerase inhibitor)
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