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Genomic Prediction of Complex Traits - Coggle Diagram
Genomic Prediction of Complex Traits
Preface
Relatedness between the reference and the candidate populations
Trait architecture
Optimal marker density
Organization of the breeding program
Solving the mixed models
REML
n>p
License required
ASReml
Mix99
HPMIXED-SAS
No licence
REMLF90
WOMBAT
Echidna
p>n
GCTA
rrBLUP
MTG2
sommer
Experimental Design/Breeding program
Self-pollinated crops
Mass selection
Purelines selection
Pedigree selection
Bulk Method
Backcross Method
Others
Cross-pollinated Crops (Egu)
Methods
Population improvement/Increase the frequency of desirable alleles
Progeny selection
Recurrent selection
Mass selection
Hybrid and synthetic Varieties/strains selected on the basis of their combining ability
Development of Inbreds
Hybrid Seed
Main concerns
Inbreeding depression
Methods for Mapping QTL
2.1 Linkage Mapping Methods
2.2 LD mapping/GWAS
Chp1: Genetic Bases of Complex Traits: From Quantitative Trait Loci to Prediction