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miRNA Crosstalk network_4 - Coggle Diagram
miRNA Crosstalk network_4
/mnt/ntfs/Christine/script
subset_coding_gene.py
/mnt/ntfs/Christine/data
FPKM_LUAD_normal_matrix_verNA.txt
FPKM_LUAD_tumor_matrix_verNA.txt
3_UTR_hsa_ensembl_gene.txt
/mnt/ntfs/Christine/data
FPKM_LUAD_tumor_matrix_coding_gene.txt
FPKM_LUAD_normal_matrix_coding_gene.txt
get_sub_mp_prefershift_target.R
/mnt/ntfs/Christine/data
scc_archetype_target_over0.26rpm_normalization.txt
scc_isomir_target_over0.26rpm_normalization.txt
/mnt/ntfs/Christine/data
T_mp_prefershift_shift_13_target_scc_z_pval.txt......
subset_coexpress_L0L1_target.R
/mnt/ntfs/Christine/data
T_seed20_target_L0L1_scc.txt
T_seed16_target_L0L1_scc.txt
T_seed21_target_L0L1_scc.txt
T_mp_prefershift_80pct_arche_target_L0L1_scc.txt
T_seed26_target_L0L1_scc.txt
T_mp_prefershift_80pct_isomir_target_L0L1_scc.txt
/mnt/ntfs/Christine/data
T_seed21_coexpress_sig_target.txt.....
T_seed21_coexpress_sig_75pct_target.txt......
subset_N_isomir_utr.py
/mnt/ntfs/Christine/tmp_output/N_prediction
pita_ENSG_all.txt
rnahybrid_ENSG_all.txt
miranda_ENSG_2_all.txt
subset_ppi_coding_gene.py
/mnt/ntfs/Christine/data
LUAD_tumor_top_seed21_mir_on_gene_degree_counts.txt
LUAD_tumor_top_seed20_mir_on_gene_degree_counts.txt
LUAD_tumor_top_seed26_mir_on_gene_degree_counts.txt
LUAD_tumor_top_seed16_mir_on_gene_degree_counts.txt
Ensembl_PIN_of_InBio_Map.txt
dominant_mp_prefershift_80pct_arche_target.txt
FPKM_LUAD_tumor_matrix_coding_gene.txt
dominant_mp_prefershift_80pct_isomir_target.txt
/mnt/ntfs/Christine/data
T_mp_prefershift_80pct_arche_target_L0L1_scc.txt
T_mp_prefershift_80pct_arche_except_genes.txt :
T_seed26_except_genes.txt.....
T_seed26_target_L0L1_scc.txt.....
T_mp_prefershift_80pct_isomir_target_L0L1_scc.txt
T_mp_prefershift_80pct_isomir_except_genes.txt
subset_targetscan_input_with_mir22.py
/mnt/ntfs/Christine/data
LUAD_normal_hsa22_over0.26rpm_normalized_rpm_v3.txt
mir_for_context_score_file_normal_isomir.txt
/mnt/ntfs/Christine/data
mir_for_context_score_file_normal_isomir_mir22.txt
sub_target_list_from_most_coverd_seed.py
/mnt/ntfs/Christine/data
LUAD_T_isomir_seed_sequence_6mer.txt
scc_isomir_target_over0.26rpm_normalization.txt
LUAD_T_arche_seed_sequence_6mer.txt
scc_archetype_target_over0.26rpm_normalization.txt
/mnt/ntfs/Christine/data
LUAD_T_top_seed16_mir_target.txt
scc_ppi_severR.R
/mnt/ntfs/Christine/data
LUAD_tumor_shared_seed21_mir_on_gene_degree_counts.txt
LUAD_tumor_shared_seed16_mir_on_gene_degree_counts.txt
FPKM_LUAD_tumor_matrix_verNA.txt
LUAD_tumor_shared_seed15_mir_on_gene_degree_counts.txt
/mnt/ntfs/Christine/tmp_output/mp_prefershift_ppi
dominant_mp_prefershift_arche_ppi_pct25_10480.txt.....
transform_zscore_from_scc.R
/mnt/ntfs/Christine/data
LUAD_T_top_seed16_mir_target.txt....
/mnt/ntfs/Christine/data
LUAD_T_top_seed16_mir_target_scc_z_pval.txt...
compare_to_ppi.R
/mnt/ntfs/Christine/data
Ensembl_PIN_of_InBio_Map.txt
scc_mp_prefershift_arche_pct75_coexpression_sig.txt
/mnt/ntfs/Christine/tmp_output/mp_prefershift_ppi/match_ppi
dominant_mp_prefershift_arche_ppi_pct25_10480.txt......
utr_enst_to_ensg.py
/mnt/ntfs/Christine/data
ensembl_ENSTv_ENST_ENSG.txt
UTR_Sequences_9606.txt
/mnt/ntfs/Christine/data
UTR_ensg_seq_9606.txt
merge_gene_scc_expression.py
/mnt/ntfs/Christine/tmp_output/mp_prefershift_ppi
dominant_mp_prefershift_arche_ppi_pct25_10480.txt.....
/mnt/ntfs/Christine/data
scc_mp_prefershift_arche_pct75_coexpression_sig.txt
seed_group_isomir_compare.R
/mnt/ntfs/Christine/data
LUAD_N_seed_sequence_6mer.txt
LUAD_tumor_hsa22_over0.26rpm_normalized_rpm_v3.txt
LUAD_T_seed_sequence_6mer.txt
LUAD_normal_hsa22_over0.26rpm_normalized_rpm_v3.txt
/mnt/ntfs/Christine/data /mnt/ntfs/Christine/plot
T_seed_group_matched2archetype_expression.txt
T_seed_group_not_matched2archetype_expression.txt
LUAD_seed_group_isomir_only_expression.pdf
N_seed_group_not_matched2archetype_expression.txt
LUAD_seed_group_isomir_only_average_expression.pdf
N_seed_group_matched2archetype_expression.txt
scc_ppi_v2.R
/mnt/ntfs/Christine/data
Ensembl_PIN_of_InBio_Map.txt
LUAD_tumor_shared_seed26_mir_on_gene_degree_counts.txt
FPKM_LUAD_tumor_matrix_verNA.txt
/mnt/ntfs/Christine/tmp_output/tumor_ppi
seed21_ppi_pct75_79349.txt.....
plot_dominant_shift_multi_80pct.R
/mnt/ntfs/Christine/data
normal_dominate_shift_table.txt
/mnt/ntfs/Christine/data
/mnt/ntfs/Christine/plot
LUAD_N_dominant_80pct_mp_shiftcount.pdf
LUAD_N_dominant_80pct_mp_shannon_index.pdf
LUAD_N_dominant_80pct_mp_prefershift.pdf
LUAD_dominant_80pct_fp_prefershift.pdf
normal_dominant_mp_prefershift_80pct.txt
LUAD_dominant_80pct_fp_shiftcount.pdf
LUAD_dominant_80pct_fp_shannonindex.pdf
mir_on_target_from_most_coverd_seed.py mir_on_target_from_most_coverd_seed_v2.py
/mnt/ntfs/Christine/data
scc_anti_arche_target_sig0.01_over0.26rpm_normalization_v3.txt
scc_coexpress_mir_mir_sig0.01_over0.26rpm_normalization_v3.txt
scc_anti_isomir_target_sig0.01_over0.26rpm_normalization_v3.txt
tumor_isomir_intersection_3_scores.txt
LUAD_N_isomir_seed_sequence_6mer.txt
tumor_isomir_update66_3_scores.txt
LUAD_N_arche_seed_sequence_6mer.txt
tumor_archetype_clean_intersection_3_scores.txt
LUAD_T_isomir_seed_sequence_6mer.txt
tumor_archetype_TC_intersection_3_scores.txt
LUAD_T_arche_seed_sequence_6mer.txt
tumor_all_mir_target_3_scores.txt
/mnt/ntfs/Christine/data /mnt/ntfs/Christine/plot
LUAD_tumor_shared_seed26_alltarget_mir_on_gene_degree_counts.txt
tumor_shared_seed26_alltarget_mir_on_target_degree.pdf
tumor_shared_seed26_mir_on_target_degree.pdf
LUAD_tumor_shared_seed15_mir_on_gene_degree_counts.txt.....
LUAD_tumor_shared_seed26_mir_on_gene_degree_counts.txt
LUAD_tumor_top_seed16_mir_on_target_degree.pdf....
tumor_shared_seed_mir_on_target_degree.pdf
LUAD_tumor_shared_seed15_alltarget_mir_on_gene_degree_counts.txt.....
LUAD_tumor_shared_seed_mir_on_gene_degree_counts.txt
LUAD_tumor_top_seed16_alltarget_mir_on_target_degree.pdf.....
LUAD_normal_seed_shared_n_specific_mir.txt
tag_L0.py
/mnt/ntfs/Christine/data
T_seed26_coexpress_sig_75pct_target.txt......
LUAD_tumor_top_seed26_mir_on_gene_degree_counts.txt.....
/mnt/ntfs/Christine/data
T_seed20_coexpress_sig_75pct_target_L0tag.txt....