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miRNA Crosstalk network_3 - Coggle Diagram
miRNA Crosstalk network_3
/mnt/ntfs/Christine/script
1_expression_base_on_seed_arche_isomir_v5_6mer_over0.26.R
/mnt/ntfs/Christine/data
LUAD_tumor_hsa22_over0.26rpm_normalized_rpm_v3.txt
LUAD_N_seed_sequence_6mer.txt
LUAD_normal_hsa22_over0.26rpm_normalized_rpm_v3.txt
LUAD_T_seed_sequence_6mer.txt
LUAD_tumor_isomirs_seq_info_ALL.txt
LUAD_normal_isomirs_seq_info_ALL.txt
/mnt/ntfs/Christine/data /mnt/ntfs/Christine/plot
LUAD_tumor_hsa22_over0.26rpm_6mer_seed_occurence_v3.pdf
LUAD_tumor_hsa22_0.26_arche_6mer_seed_expression_v2.pdf
LUAD_normal_hsa22_over0.26rpm_6mer_seed_occurence_v3.pdf
LUAD_tumor_hsa22_0.26_isomir_6mer_seed_expression_v2.pdf
LUAD_normal_seed_cover_isomir_patient_expression.txt
LUAD_normal_hsa22_0.26_arche_6mer_seed_expression_v2.pdf
LUAD_normal_hsa22_0.26_isomir_6mer_seed_expression_v2.pdf
LUAD_tumor_seed_cover_isomir_patient_expression.txt
seperate_arche_isomir_seed_df.R
/mnt/ntfs/Christine/data
LUAD_N_seed_sequence_6mer.txt
LUAD_T_seed_sequence_6mer.txt
/mnt/ntfs/Christine/data
LUAD_N_isomir_seed_sequence_6mer.txt
LUAD_T_arche_seed_sequence_6mer.txt
LUAD_N_arche_seed_sequence_6mer.txt
LUAD_T_isomir_seed_sequence_6mer.txt
density_of_each_communities.py
/mnt/ntfs/Christine/partition_density
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3_maxS0.395349_maxD0.375604.comm2nodes.txt
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3_maxS0.395349_maxD0.375604.comm2edges.txt
/mnt/ntfs/Christine/partition_density
LUAD_sig0.01_over0.26rpm_density_node_edge.txt
LUAD_over0.26rpm_density_distribution.txt (X)
get_crosstalk_target_gene.py
/mnt/ntfs/Christine/data
LUAD_T_arche_seed_sequence_6mer.txt
LUAD_T_isomir_seed_sequence_6mer.txt
LUAD_normal_seed_cover_isomir_patient_expression.txt
LUAD_N_arche_seed_sequence_6mer.txt
LUAD_tumor_seed_cover_isomir_patient_expression.txt
LUAD_N_isomir_seed_sequence_6mer.txt
scc_coexpress_mir_mir_sig0.01_over0.26rpm_normalization_v3.txt
tumor_dominant_mp_prefershift_80pct.txt
scc_anti_isomir_target_sig0.01_over0.26rpm_normalization_v3.txt
scc_anti_arche_target_sig0.01_over0.26rpm_normalization_v3.txt
/mnt/ntfs/Christine/data
dominant_mp_prefershift_80pct_isomir_target.txt
dominant_mp_prefershift_80pct_arche_target.txt
find_connected_component_v2.py
/mnt/ntfs/Christine/partition_density /mnt/ntfs/Christine/data
LUAD_tumor_isomirs_sequences.txt
scc_anti_isomir_target_sig0.01_over0.26rpm_normalization_v3.txt
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3_maxS0.395349_maxD0.375604.comm2nodes.txt
scc_anti_arche_target_sig0.01_over0.26rpm_normalization_v3.txt
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3.txt
/mnt/ntfs/Christine/partition_density/com_19107
n19107_100_degree_25_node_degree_list.txt.......
n19107_100_degree_25_edge_list.txt.......
network_description.py
/mnt/ntfs/Christine/data
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3.txt
/mnt/ntfs/Christine/plot
LUAD_tumor_network_degree_freq_v3.pdf
community_num_nodes_n_edges.py
/mnt/ntfs/Christine/partition_density
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3_maxS0.395349_maxD0.375604.comm2nodes.txt
community_edge_len_list.txt
/mnt/ntfs/Christine/partition_density
community_num_nodes_n_edge.txt
find_connected_component.py
/mnt/ntfs/Christine/partition_density /mnt/ntfs/Christine/data
scc_anti_isomir_target_sig0.01_over0.26rpm_normalization_v3.txt
scc_anti_arche_target_sig0.01_over0.26rpm_normalization_v3.txt
LUAD_tumor_isomirs_sequences.txt
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3.txt
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3_maxS0.395349_maxD0.375604.comm2nodes.txt
/mnt/ntfs/Christine/before_NOV_20/link_communities/ppi
n103103_23_degree_4_edge_list.txt......
dominate_shift_sibling_0.26_v3.R
/mnt/ntfs/Christine/data
LUAD_tumor_hsa22_over0.26rpm_normalized_rpm_v3.txt
tumor_dominate_shift_table.txt
LUAD_tumor_isomirs_seq_info_ALL.txt
/mnt/ntfs/Christine/plot
LUAD_mp_prefershift_sibling_nor0.26_tumor_21.pdf.....
seed_isomir_distribution_16_isomir_v2.pdf......
0_scc_ppi.R
/mnt/ntfs/Christine/data
dominant_mp_prefershift_80pct_arche_target.txt
dominant_mp_prefershift_80pct_isomir_target.txt
FPKM_LUAD_tumor_matrix_verNA.txt
/mnt/ntfs/Christine/tmp_output/mp_prefershift_ppi
dominant_mp_prefershift_arche_ppi_pct25_10480.txt.......
dominant_mp_prefershift_isomir_ppi_pct25_10480.txt........
remove_wrong_isomir.py
/mnt/ntfs/Christine/data
scc_isomir_target_anti_sig0.01_over0.26rpm_normalization.txt
scc_archetype_target_anti_sig0.01_over0.26rpm_normalization.txt
LUAD_tumor_archetype_hsa22_over0.26rpm_430_normalization_v2.txt
fisher_mir_mir_over0.26rpm_sig0.01_normalization_v2.txt
LUAD_tumor_isomir_hsa22_over0.26rpm_430_normalization_v2.txt
scc_mir_mir_over0.26rpm_coexpress_sig0.01_normalization_v2.txt
/mnt/ntfs/Christine/data
fisher_mir_mir_sig0.01_over0.26rpm_normalization_v3.txt
scc_coexpress_mir_mir_sig0.01_over0.26rpm_normalization_v3.txt
edgelist_tumor_sig0.01_over0.26rpm_normalization_v3.txt
plot_dominant_shift_multi.R
/mnt/ntfs/Christine/data
tumor_dominate_shift_table.txt
plot (X)
merge_mir_target_fisher.py
/mnt/ntfs/Christine/tmp_output/fisher_mir_target
fisher_tumor_mir_target_over0.26rpm_3_scores_nor_10316.txt......
/mnt/ntfs/Christine/data
scc_archetype_target_anti_sig0.01_over0.26rpm_normalization.txt
scc_isomir_target_anti_sig0.01_over0.26rpm_normalization.txt
fisher_mir_mir_over0.26rpm_sig0.01_normalization_v2.txt
fisher_mir_mir_over0.26rpm_sig_normalization_v2.txt