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NHMRC Wrap up meeting - Coggle Diagram
NHMRC Wrap up meeting
Publications
AB - overview methods
WL - Systems biology review
WL - Spatial transcriptomics
WL - Multiomics/correlation proof of concept
Psychological data paper
MC
Overview / Summary TB patients in Aus
PI/CO/AB
factors associated with TB - MJA
Microbial profiles
ref - blood donor microbiome - circulatome
SE
miRNA CSIRO proof of concept (tick bite signatures)
CSIRO lead
Transcriptomics CSIRO FULL - miRNA/circRNA
SE/CO/AB + CSIRO
THE MEGA PAPER!!
MU lead - CSIRO
Francisella blocking primer
CO/SE
Chronic Tick Patients
Demographics
18S Piro
Microscopy
16S NGS
Midichloria skin/tick
SE/JA
Neuroborreliosis case
CO
2024
January
All extractions done
Send off AGRF blood + tissue
ticks library prep in house
30/1 STOP Gp2 enrolments
February
Blocking primer development Att
CSIRO transcriptomics PAXgene bloods
March
Target PCR
Culture extracts - PCR
Send culture + ticks --> AGRF
April
May
Data entry + Paper methodology write up SE
June
Allen Cheng - Final data analysis
July
August - December
Writing up
SE Multiomics data integration
Laboratory
Biobank @ Geelong
all serum
CSIRO
OMICS
UQ
Viruses
all cultures
UQ
viruses
MU
NGS
Paperwork from ML --> MU
Determine final OMIC analysis by CSIRO
Transcriptomics
miRNA
PAXgene samples
CSIRO
ALL minus WL samples
Pool culture samples
NGS
Correlate/match
UQ Rickettsia transcriptomics data
ARRL data + our 16S NGS
Data into REDCAP
UQ result
Remaining pathology
HEALIUS
NSW HP
Serology
ARRL
symptom classification?
Target PCRs
Borrelia
blood, tissue, tick
flab Loh primers
Piro
tissue, blood
Jefferies primers
Trypanosoma
tissue, blood
NGS primers
DEFENCE re infection criticism
NGS
Target primers
Culture
Organisational
Still to do
SE contract extend @ 0.8 FTE --> END MAY
PI talk to UR
PI revisit contract with NHMRC
PI updated FINANCE position
PI SE CO WL CS + ?
MEET: discuss FINAL OMICS
Transcriptomics PAXgene
LATER:
Contact Gp 1 patients with results
Roadshow / meet ups
Drs
Patients - Gp1
PI follow up Monday.com - Payments
REDCAP
PI Tell Rym TK cannot enrol
HREC amendment
archive minor
Post project amendment for MOnday.com data
PI - MU HREC 1st
PI follow up Elaine re Healius
SE get quote from UW for transcriptomics on blood
PI to ask CS for quote
PO request - $145K
283 PAXgene