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Chemical Elements are Joined Together to Form Biological Molecules 1.1 -…
Chemical Elements are Joined Together to Form Biological Molecules 1.1
INORGANIC IONS + WATER
INORGANIC IONS
Micronutrients
- Minerals needed in minute (trace) concentrations
Macronutrients
- Minerals needed in small concentrations
Organic
- Molecules that have a high proportion of carbon and hydrogen atoms
Inorganic
- A molecule or ion that has no more than one carbon atom
WATER
Polar molecule; oxygen end - -ve charge, hydrogen atoms - +ve charge
Uneven distribution of charge -
Dipole
When 2 water molecules are in close contact, opposing charges attract each other forming a
hydrogen bond
Individually hydrogen bonds are weak, many form lattice-like framework which is much strronger
This attraction between water molecules -
Cohesion
PROPERTIES
Solvent
- Ions + polar molecules can dissolve in water, non-polar molecules cannot
Transport Medium
- Blood is largely water, transports many dissolved substances around body, minerals dissolved in water are transported from root to leaves via xylem in plants
Chemical Reactions
- Transport allows chemical reactions to take place when particles or molecules meet
High Specific Heat Capacity
- Large amount of heat needed to raise temp, Prevents large fluctuations, Keeps temp of aquatic environments stable so organisms don't have to endure extremes, Allows enzymes within cells to work effectively
High Latent Heat of Vaporisation
- Due to cohesion, large amount of heat energy needed to change water to gas, process of evaporation is very effective way of cooling body, evaporation of water from surface causes cooling
Cohesion
- Attraction between water molecules allows water to be transported, in long columns, up xylem vessels
Surface Tension
- Ordinary temps water has highest surface tension of any liquid except mercury. In ponds cohesion supports organisms
Density
- Maximum density at 4°C; ice is less dense therefore floats on surface + insulates water beneath, reduces tendency for large bodies of water to freeze completely allowing organisms to survive
CARBOHYDRATES
MONOSACCHARIDES
3 carbons = Triose
5 carbons = Pentose
6 carbons = Hexose
Functions
= energy source for respiration, form large molecules
Characteristics
= soluble, sweet, form crystals
Organic compounds that contain atoms carbon, hydrogen, oxygen
ISOMERS
Same chemical formula + same no. of atoms, atoms simply arranged differently
Glucose - a glucose, b glucose
Formula - C₆H₁₂O₆
a glucose - H atom above, OH group below
b glucose - H atom below, OH group above
DISACCHARIDES
2 monosaccharides
Glycosidic bond
- broken by
Hydrolysis
Maltose = Glucose + Glucose
Sucrose = Glucose + Fructose
Lactose = Glucose + Galactose
POLYSACCHARIDES
Large complex polymers
Many monomers linked by glycosidic bonds formed by condensation reaction
STARCH
Allows plants to store glucose
Made up of a glucose monomers
AMYLOSE
Unbranched + coiled, C1-C4 glycosidic bonds
AMYLOPECTIN
Branched, C1-C4 + C1-C6 glycosidic bonds
Compact + no osmotic effect on cell; doesn't affect water potential of cell
Both easily hydrolysed to a glucose, soluble + can be transported to wherever energy is needed
GLYCOGEN
Main storage product in animals
Similar structure to amylopectin
More branched, C1-C4 + C1-C6 glycosidic bonds
CELLULOSE
Structural polysaccharide found in plant cell walls
Many long, parallel chains of b glucose units
Between 60-70 cellulose molecules become tightly cross-linked to form bundles - microfibrils
Microfibrils bunched together in bundles to form fibres
Unreactive + stable + has high tensile strength
CHITIN
Similar structure to cellulose
Found in exoskeleton of athropods, insects, + fungal cell walls
Long chains of b glucose molecules linked by C1-C4 glycosidic bonds
Each monomer has a group derived from amino acid added - Acetylamine group
Strong, waterproof + lightweight
FOOD TESTS
REDUCING SUGARS
Benedict's test
Add equal vol. of benedict's solution to sample
Put in water bath at 80°C
+ve = blue ---> brick red
All monosaccharides, Lactose + Fructose
NON-REDUCING SUGARS
Sucrose
Boils in dilute hydrochloric acid
Neutralise with dilute sodium hydroxide
Complete same test as reducing sugar
LIPIDS
Emulsion test
Mix with ethanol to dissolve lipids
Add equal vol. of water + shake
lipids are soluble - +ve = cloudy white
PROTEINS
Biuret test
Mix solution + water
Add equal vol. of biuret reagent
Shake well - let stand for 5 mins
Test - semi-quantitative
+ve = lilac ---> dark purple
LIPIDS
TRIGLYCERIDES
Formed by condensation reaction between glycerol + fatty acids
Glycerol - type of alcohol
Fatty acids - Organic molecules which have -COOH group attached to a long hydro-carbon tail
Bond formed - Ester bond - can be broken by hydrolysis
Has 3 ester bonds
Fats + oils
Contain carbon, hydrogen, oxygen
Insoluble in water - non-polar
Soluble in other solvents - ethanol, chloroform, ether
FATTY ACIDS
UNSATURATED
Double bonds between neighbouring carbon atoms
Don't contain maximum possible number of hydrogen atoms
If only 1 double bonde between carbon atoms - monosaturated
2 or more double bonds between carbon atoms - polysaturated
Double bond forms a kink - unsaturated fatty acids can't be tightly packed together - Not solid
SATURATED
No double bonds between neighbouring carbon atoms in hydrocarbon tail
Carries maximum possible number of hydrogen atoms
Solid
Animal lipids tend to be saturated
Possible link between saturated fatty acid + heart disease
HEART DISEASE
Main cause - fatty deposits in coronary arteries (atheroscerosis) + high blood pressure (hypertension)
Contributory Factors - Diet high in saturated fatty acids, smoking, lack of exercise + ageing
When food has been absorbed at small intestine, lipids + proteins combine to make
lipoproteins
, which travel around body in blood stream
If diet is high in saturated fat, low-density lipoproteins build up, fatty material (atheroma) is deposited in coronary arteries, restricting blood flow - oxygen delivery to heart tissue
If diet has high proportion of saturated fats, body make more high-density lipoproteins, carry harmful fats to liver for disposal
Inner wall of artery has a smooth endothelial lining, atheroma is deposited on endothelium, reducing available volume for blood flow, atheroma may completely block artery's lumen
PHOSPHOLIPIDS
Special type of lipid
One of the 3 fatty acid tails is replaced by a phosphate group
Phosphate group is polar - soluble in water
Hydrophilic heads, Hydrophobic fatty acid tails
In water, hydrophobic tails turn inwards forming a micelle
If enough phospholipid molecules a bilayer is formed
Phospholipid bilayer forms basis of all cell membranes
PROTEINS
Differ from carbohydrates + lipids, also contain nitrogen atoms
Many also contain sulphur + phosphorus
AMINO ACIDS
Proteins are polymers made of monomers - amino acids
Chain of amino acids - polypeptide
Thousands of different proteins + shape is determined by specific sequence of amino acids in chain
Shape of protein determines it's function
Same basic structure:
Central carbon
Amino group
Carboxyl group
Hydrogen atome
R-group - variable group of atoms
Essential - can't be synthesised by our bodies, must be provided by our diet
Non-essential - can be synthesised by our bodies
DIPEPTIDES + POLYPEPTIDES
Proteins are linear sequences of amino acids
Amino group of one amino acid reacts with carboxyl group of another by condensation reaction; water is eliminated + peptide bond is formed
Resulting compound is a dipeptide
More amino acids can be added in this way to form polypeptide molecule which is a type of polymer
Polypeptides can be further modified to form protein molecules with specific structures + functions
4 LEVELS
PRIMARY
Sequence of amino acids in polypeptide chain
Sequence of amino acid is determined by DNA; 1 gene codes for 1 polypeptide
Bond between each amino acid is peptide bond
SECONDARY
Shape that polypeptide chain forms due to hydrogen bonding
Hydrogen bonds twist + fold polypeptide forming an alpha helix or a less comman beta pleated sheet
TERTIARY
Alpha helix of secondary protein structure is further folded + twisted to give a more complex, compact 3D structure
Shape is maintained by disulphide, ionic, covalent hydrophobic + hydrogen bonds
Enzymes have a tertiary protein structure
Bonds maintain shape of enzyme's active site
QUATERNARY
Structure arises from a combination of 2 or more polypeptide chains in tertiary form
Associated with non-protein groups + form large complex molecules, haemoglobin
Haemoglobin has 4 polypeptide chains
4 genes are needed to code for haemoglobin; 1 gene for each polypeptide
CLASSIFICATION
GLOBULAR
Have functions such as enzymes, antibodies, hormones
Compact + folded into 3D spherical molecules
Soluble in water
Haemoglobin; Transports oxygen to body tissues
FIBROUS
Perform structural functions
Consist of polypeptides in parallel chains or sheets with numerous cross linkages to form long fibres
Insoluble in water, strong + tough
Collagen provides properties needed in tendons; a single fibre consists of 3 identical polypeptide chains twisted together like a rope
These chains are linked by cross-bridges, making a very stable molecule