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week 6 - Coggle Diagram

- - - - require reference
  - - - required species specific cgMLST scheme
- - - - connect samples that could be epidemiological linked
- - - - nucleotide level annotation
        
        identify physical genes, RNA's and repetitive elements
      - protein level annotation
        
        determine the possible functions of genes
      - process level annotation
        
        identify the pathways and processes in which different genes interact
      - programs Prokka, Rast
- - - - 25-40% of samples can be redundant in a set