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Week 1 - Coggle Diagram
Week 1
Bioinformatics Tools
Relatedness = Snp tree
Resistance knowledge base = ResFinder
Species = KmerFinder
MLST Finder = resistance knowledge base
Epidemiology
the science that studies
effects of health
Disease conditions in defined populations
The Causes
The patters
Questions
Has it been seen before
How can we fight it
What is it
Is it an outbreak
Identification and Typing
Any characterization below the (sub-) species level is termed "typing"
Identification
Genus
Species
Family
(Subspecies)
Typing
PFGE type
MLVA type
Ribotype
MLST Type
Phagetype
DNA microarray analysis
Serovar
WGS Whole genome sequence
Methods used for this characterization are per definition typing methods
What is infectious disease
DNA Alignment