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SmartPath: automatic multimodal whole slide histopathology imaging system …
SmartPath: automatic multimodal whole slide histopathology imaging system
Introduction
Related work
Similar software with runtime analysis and control
What we proposed and our contribution
Motivation and background
Multimodal histopathology
SHG imaging for collagen fibers
Overview of digital histopathology
Whole slide image analysis
Machine learning
Exist software
Microscope automation
Exist software
Methods
Software structure and Pycro-manager
Overall structure
Data transfer and Pycro-manager
Interaction with annotation software
Imaging system
Machine learning model
Weakly supervised learning model
Training interface
Result
Experiment on Pancreatic cancer TMAs
Sample set description
Illustration figures