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FindTransferAnchors - Coggle Diagram
FindTransferAnchors
R builtin functions
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prcomp()
- dimentional_reduction.R: 835
crossprod()
- dimentional_reduction.R: 347
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related functions
RenameCells()
- integration.R: 580
- generics.R: 665
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VariableFeatures()
- integration.R: 588
- generics.R: 1073
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DefaultAssay()
- integration.R: 589
- generics.R: 154
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GetResidual()
- integration.R: 597
- preprocessing.R: 462 - 112
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RunPCA()
- integration.R: 644
- dimensional_reduction.R: 792 - 75
irlba()
- integration.R: 811
- missing
RunCCA()
- integration.R: 705
- dimensional_reduction.R: 329 - 36
Standardize()
- dimentional_reduction.R: 344
- missing
FindAnchors()
- integration.R: 720
- integration.R: 1988 - 83
FindAnchorPairs()
- integration.R: 2028
- integration.R: 2074 - 56
GetIntegrationData()
- integration.R: 2080
- object.R: 1131 - 7
SetIntegrationData()
- integration.R: 2119
object.R: 1334 - 15
FindNN()
- integration.R: 2013
- integration.R: 2179 - 101
NNHelper()
- integration.R: 2229
- clustering.R: 643 - 18
Embedding()
- integration.R: 2220
- object.R: 2843 - 4
CheckDots()
- object.R: 2749
- utilities.R: 1395 - 124
TopDimFeatures()
- integration.R: 2035
- integration.R: 3039 - 22
TopFeatures()
- integration.R: 3111
- object.R: 1415 - 15
FilterAnchors()
- integration.R: 2043
- integration.R: 1930 - 57
ScoreAnchors()
- integration.R: 2056
- integration.R: 3035 - 55
GetIntegrationData()
- integration.R: 3045
- object.R: 1131 - 8
ConstructNNMat()
- integration.R: 3053
- integration.R: 1888 - 7
SNNAnchor()
- integration.R: 3061
- src/integration.cpp: 166