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Pan-Genome Assembly :microscope: (Representation of Pan-genomes (Edit…
Pan-Genome Assembly :microscope:
Representation of Pan-genomes
Edit script representation
Efficient edit script encoding
Compression using edit script
:mag:
Can we prove that edit scripts are an efficient representation or there exists a better one? :question:
Algorithm to apply edit script :desktop_computer::
Alignment against all variations
:mag:
[RCM+19] :bookmark:
NP-Hardness of graph based alignment with edit distance
Indexing of variations
Poster @ RECOMB
:medal:
Variant Graph
Sequence to graph alignment :mag:
Mäkinen :bookmark:
Representation :mag:
gPBWT [NGP17] :bookmark:
PBWT
:closed_book:
BWT
GPWT [SGN+18] :bookmark:
Pan-genome assembly algorithms :mag:
[CPS+16] :bookmark:
??
Grant Proposal
:checkered_flag:
Strings
Edit Distance
:closed_book: Suffix Array
Graph
Sequence graph
Assembly Graph