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Conducting a GWAS (Analysis (Imputation (GImpute), Statistics, Data format…
Conducting a GWAS
Analysis
Imputation
GImpute
Statistics
Data format
Polygenic
PRSice
https://www.ncbi.nlm.nih.gov/pubmed/25550326
Design
Power calculation
Number of participants
Number of controls
Population genetics
Choosing a subject population
Exclusion criteria?
Phenotypic data
Which data to collect?
Curating the data into a database
Genetic samples
Genotyping technologies
Whole genome sequencing
Exome sequencing
SNP arrays
Illumina
Affymetrix
Single SNP genotyping
Sample size required
Blood sample
Buccal sample
Saliva sample
Quality control
Validation of data
SNP data
Phenotypic data
Phenotypic database