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Rule1 (Rule1 (N (FailReason (LowQ30, LowQ20, LowCoverage, LowAverageDepth)…
Rule1
Rule1
N
FailReason
LowQ30
LowQ20
LowCoverage
LowAverageDepth
QC
FAIL
Y
QC
PASS
Coverage >=95%
Average Depth >=100
Q20 >=95%
Q30 >=85%
FailReason
Q30Fail
Q20Fail
LowCoverage
LowAverageDepth
LowCaptureRate
HighDupRate
LowMapRate
Suggestion
QCstatue
append to
QChistory
Reseq
Rebuild
Resample
Refund
Check
Check
FailReason
LowMapRate
HighDupRate
LowCaptureRate
Capture Rate >=50%
Dup Rate <=50%
Map Rate >=99%
Rule3
QCdetail
Q20Fail
Q30Fail
QChistory
Q20Fail
Q30Fail
Rule3
Y
N
Suggestion
Reseq
RuleEx2
RuleEX2
Y
N
Suggestion
Reseq
QChistory
Reseq
Rule4
Rule4
Y
Suggestion
Resample
N
Suggestion
Rebuild
QChistory
LowMapRate
QCdetail
LowMapRate
RuleEx3
RuleEx3
N
Y
Suggestion
Resample
QChistory
Rebuild
Suggestion
Rebuild
RuleEx1
QChistory
Resample
Rebuild
RuleEx1
Y
Suggestion
Refund
N
QC
FAIL
Rule2
FailReason
LowCaptureRate
HighDupRate
LowMapRate
Rule2
N
Y
sampleInfo