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Cells (Functions (cycle model (membrane functions), volume update function…
Cells
Functions
cycle model
membrane functions
volume update function
update migration bias
custom cell rule
Update phenotype
update velocity
set orientation
Phenotype
Cycle
Cycle stores the graph structure and parameters of the current cycle model
Phase
Link
Cycle Model
Phase transition rate
cycle data
Death
cycle which ends in death!
death parameters
Motility
speed
direction
bias speed
Volume
All elements of volume
total
solid
fluid
cytoplasm
supports cell divsiion
Geometry
Secretion
secreation rate
update rates
mechanics
adhesion
repulsion
Member functions
update motility vector
advance bundled phenotype functions
assign position
convert to cell definition
create cell
delete cell
Cell definition
id
name
parameters
Functions
cell state
phenotype
Parameters
O2 parameters
necrosis type
Custom data
Allows custom data to be added to a cell
Cell State