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Gene regulation networks - Coggle Diagram
Gene regulation networks
Cell types
single-cell
sc contact maps
sc activities
spatial organization
microenvironments
cell-cell interactions
intrinsic GRN with spatial environment
Combinations
one gene regulated by multiple
multiple regulate one genes
Combinatorial CRISPR
Deep learning
Types of molecules
DNA
enhancers
CRISPRi Tiling
STARR-seq
promoters
RNA
proteins
TF
chromatin remodelers
protein barcoding?
perturb regulatory proteins
small molecules
metabolites
microbiome
signaling
pharmacogenetics data?
Effects
RNA expression
protein expressions
phenotypes
global effects
Networks
topology
energy landscape?
pathway interactions
perturbation
inter network
Mechanisms
3D organization
loop, TAD, CTCF
interactomes
temporal influence?
CRISPRs
frequency of interactions
developmental stage
linear tracing