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Metadata (output json (who provides generate_metadata.sh (customer (They…
Metadata
output json
format response.metadata.json
json - dont care which fields are there since customer generates, platfrom should agree with customer what kind of json they will have
who provides generate_metadata.sh
customer
They need to know which files to parse, location of those files, they cannot develop a script in the first run
They tell us "what to do" on what files. They provide some scripts but not the final script. The final script responsibility falls on us
fas
bio informaticinan
where should the script generate_metadata.sh be placed
for scripted pipelines
in platfrom script
partial metadata
after each step
complete metadata
after final step
cwl pipelines
partial metadata
add extra scripting at each tool
add extra cwl step after each tool
complete metadata
add extra scripting at platfrom script template
add extra cwl step after final step
it should have its own cwl
make a generic script cwl
input json
Strcuture and fields mentioned in PRD