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SwissOrthology (SIBlings) (SAB recommendation (Evaluate/benchmark…
SwissOrthology (SIBlings)
Composed of
OMA
Quest for Orthologs (QfO) benchmarking service
OrthoDB
BUSCO
Common features
Large number of completely sequenced genomes
Significant fraction
Database of orthologous genes
Regularly updated
Well-ranked
Accurate orthology predictions
Well-established
Well-maintained
Requested help
Increase the number of users
SAB recommendation
Evaluate/benchmark
Benchmarking standards
Developed by OMA
Compare approaches
Specific utility of OMA and OrthoDB
Integrate other orthology prediction methods
SIBLINGs as Common denominator btw OMA and OrthoDB
Not relevant
Cannot cope with the huge nb of genomes
Best practice
User survey
Websites status
OMA
FTP
No
SEO
To be improved
Help
FAQ
Helpdesk
Social network
YouTube channel
Biostars
OrthoDB
Help
Documentation
Optional login
Usability expertise required
Social network
No
FTP
No
SEO
OK
Best in class
Competitors
COGs (NCBI)
TreeFarm (Sanger & EMBL-EBI)