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Summary of Phylogenetic Comparative Methods - by Diogo B. Provete…
Summary of Phylogenetic Comparative Methods - by Diogo B. Provete
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I have a mismatch
between traits and phylogeny, what do I do?
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I have a topology without
branch lengths, what do I do?
Incorporate uncertainty
in branch length in the analysis using
a scalar - geiger::rescale or BayesTraits
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Assign an arbitrary branch length
(but use it with caution, at your own risk, and
as a last resort)
ape::compute.brlen(phy, 1)
Multivariate
(e.g., derived from Geometric morphometrics)
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Estimate rates in the presense
of background rate variation [MuSSCrat]
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The Surgeon general warns:
before using any method, read
the publication thoroughly, not
complying may cause rejection
of manuscripts. Here is a good place
to start
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