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BioNumerics (MANAGE (SEQUENCES (Assemble Sanger sequencing data in batch,…
BioNumerics
MANAGE
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SPECTRAL PROFILES
Import and preprocess mass spectrometry (MALDI, SELDI), gas chromatography, HPLC and other spectra
CHARACTER SETS
Import and preprocess character data from a wide range of sources, including phenotype panels, antibiotic resistance profiles, microarrays, etc.
TREND DATA
Import sequential measurements of one parameter in function of another (e.g. growth or enzymatic activity in function of time)
SEQUENCES
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Preprocess and assemble next generation sequencing (NGS) data on desktop or on a cloud-based or locally deployed Calculation Engine
META DATA
Store meta data for experiments, samples, organisms, patients
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ANALYZE
STATISTICS
Ordination, partitioning, and group validation techniques, powerful plotting
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SEQUENCE ANALYSIS
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Primer design, restriction enzyme analysis, frame determination, oligo databasing
IDENTIFICATION
Powerful classifiers including Naive Bayesian, SVM, Shrunken Centroids
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GENOME COMPARISON
Genome alignment, annotation, and whole genome SNP analysis
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DISCOVER
SHARE
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Access to public databases (MLST.net, pubMLST, pubTRST, EMBL, GenBank, SRA,...)
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