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RNA Martini model (ssRNA flexibility (Ion concentration dependency …
RNA Martini model
ssRNA flexibility
Ion concentration dependency :checkered_flag:
ssRNA length dependency :checkered_flag:
dsRNA flexibility
Local flexibility
Helical parameters :checkered_flag:
Force constants :pencil2:
Global flexibility
Persistence length :checkered_flag:
Torsional rigidity :pencil2:
Stretching modulus :pencil2:
Interactions with other molecules
Ion distributions
3D Ion distributions :checkered_flag:
Preferential interaction p :warning:
Water distributions
Standard water model :checkered_flag:
Polarizable water model :checkered_flag:
Applications
With proteins
Existing complexes :checkered_flag:
Complex formation :warning:
With DNA :checkered_flag: