Please enable JavaScript.
Coggle requires JavaScript to display documents.
Biostar handbook (Software (5、bwa, 4、Blast (测序数据比对), 3、FastQC (测序数据质控),…
Biostar handbook
Software
5、bwa
6、ReadSeq
4、Blast
测序数据比对
7、awk
3、FastQC
测序数据质控
8、samtools
2、SRA tookit
数据下载和数据解压
9、Bedtools
1、Entrez Direct
查询和下载NCBI DB中的数据
Lecture 24 - Creating interval data
Lecture 29 - Comparing feature counting software
Lecture 27 - Introduction to RNA-Seq
Lecture 20 - Pileups and coverages
Lecture 22 - Variant effect prediction
Lecture 1 - Basic Command Line
Lecture 2 - Simple Data Manipulations
Lecture 3 - Installing and Using Entrez Direct
Lecture 4 - Installing and Using the SRA tookit
Lecture 5 - Writing reusable scripts. Fetching subsequences.
Lecture 7 - Quality control with FastQC. Interpreting the outputs.
Lecture 6 - Encodings and the FASTQ format.
Lecture 8 - Quality control: base quality trimming
Lecture 9 - Quality control: pattern matching and adapter trimming
Lecture 10 - Alignments
Lecture 11 - Installing and using Blast
Lecture 13 - installing and using bwa
Lecture 12 - blastdbcmd, blastp, blastx, tblastn usage
Lecture 14 - understanding the SAM format
Lecture 15 - BAM files and samtools
Lecture 16 - Converting data with ReadSeq
Lecture 18 - Comparing alignment tools
Lecture 26 - Bedtools Tutorial
Lecture 23 - Call SNPs from the ebola data
Lecture 28 - Running the Tuxedo suite
Lecture 21 - Variant calling with samtools
Lecture 19 - samtools faidx and pileups
Lecture 30 - Gene Ontology
Lecture 17 - Simple programming with awk
Lecture 25 - Introduction to Bedtools