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MM9 - Dynamic Regulation of Protein (i) (intro (ways to regulate protein…
MM9 - Dynamic Regulation of Protein (i)
intro
cells aren't static
must change + adapt to environmental cues
growth factors stimulate cells to divide
G1
all cellular contents (bar chromos must duplicate)
protein activity disregulation: continuous growth
ways to regulate protein activity (PTMs)
level/conc
high levels: more transcription + translation
low levels when protein is damaged/has completed its purpose
location
e.g. in order to be functional TFs must translocate from cytosol to nucleus
ligand binding
cofactor requirements
phosphor/dephosphorylation
cleavage
FA modification
Ca2+ + GTP = non-peptide moieties (can be found in different molecules)
Protein degradation
When?
normal housekeeping
damaged proteins need replacing
misfolded proteins need to be recycled before they disrupt cell processes
dynamic processes
some proteins need to be tightly regulated to control function/prevent toxic build-up
e.g. cyclins
after activation via cleavage
e.g. zymogen digestive enzymes
these processes target certain proteins (specific)
How?
lysosomal degradation
degrades imported proteins
lysosomes
membrane bound organelles
arise from ER
highly acidic (pH 4) due to proton pumps pumping H+ in
necessary for acid hydrolyses (degradative enzymes)
only active @ pH4 in case they leak out (protective mechanism)
can degrade any biological material
3 pathways into lysosome...
1) autophagy
damaged proteins get packaged into autophagosomes
membranous organelles formed from ER
key method of getting rid of dangers to cell
defect: accumulation of unwanted molecules
lysosomal storage diseases - chronic inflamm
e.g. Crohn's
e.g. Inclusion (I) cell disease
accumulation of macromolecules
AR
reduced life expectancy
2) R-mediated endocytosis
tyrosine Rs internalise + fuse with golgi app
3) Phagocytosis
usually occurs when neutrophils present
proteasomal degradation
ubiquitin-proteasome system
degrades cytosolic proteins marked for destruction
Ligand binding
changes protein conformation, activating it
releases inhibitory/inactive subunits
changes cell location
e.g. steroid hormones bind to hormone R
R dimerises + enters nucleus
Proteolytic cleavage
NB in zymogens/proenzymes (e.g. ACE + trypsin)
also occurs in apoptosis