Please enable JavaScript.
Coggle requires JavaScript to display documents.
RSS_CT (projects (DOP (runs (date _description (conditions (human_ds…
RSS_CT (
projects
,
init_analyze.py
- Takes in excel (project file)
- (downloads raw data)
- Merges raw data
- Generate directory structure - project dir
prepare_analysis.py
- Reads in config file with all rules, parameters, labels, conditions
- Builds a single snake file for everything
- Builds directory structure for each condition
run_pipeline.py
- Wrapper to launch snakemake within the virtual environment, passing in configurations for running on cluster etc
#
,
kapa_wms_repo
,
conda
,
references
,
ipynb
)