Fungi

2. Deep (Subcutaneous) Fungi

  • Usually tropical/subtropical countries
  • Environmental fungi
  • Sporadic occurring infections
  • Directly inoculated into dermis/ epidermis via penetrating injury
  • Chronic and deforming
  • Some very hard to treat

1. Superficial & Cutaneous Fungi


  • Superficial mycoses
    • Generally do not provoke a significant histopathological inflammatory
      response in the host
    • e.g. pityriasis versicolor, tinea nigra, black & white pier
  • Cutaneous mycoses
    • Although fungus may be confined to the stratum corneum, pathological
      changes occur in the host tissue
    • e.g. dermatophytosis, candidosis, dermatomycoses caused by Scytalidium sp and other non-dermatophyte moulds

Other techniques

  • Antibody tests: of limited usefulness
    • e.g. Aspergillus precipitins
  • Antigen tests
    • Cryptococcus neoformans (cryptococcal antigen test done on serum or CSF, not on urine)
    • Galactomannan antigen assay: screening for
      possible Aspergillus infection
  • Molecular techniques e.g. PCR

Diseases caused by fungi

  • Poisoning etc, Allergy, Infections

Mycotoxins

  • Poisonous substances produced by certain fungi
    • Poisoning: acute or chronic
    • Aflatoxins: liver cancer

Fungal infections: clinical classifications

  • Superficial
  • Subcutaneous
  • Systemic

1. Dermatophytes

  • A group of closely related fungi which can utilize keratin and cause infections called Tinea or Ringworm and Athlete s Foot.
  • Comprises 3 genera
    • Trichophyton
    • Microsporum
    • Epidermophyton

Characteristics

  • Fungi are widespread in the environment
  • No chlorophyll
  • Absolute need for complex nutrients
  • Yeasts (single-cell form) and/or
  • Hyphae (filamentous form)
  • Teleomorph, Anamorph, Synanamorph, Holomorph

Culture

  • Almost all of the medically important fungi grow in culture - Sabouraud Dextrose Agar
  • Selective supplements (these inhibit unwanted bacteria) include
    • Cycloheximide (but this inhibits some fungi)
    • Chloramphenicol (Broad spectrum antibiotic)

Mould ID

  • Filamentous fungi are largely identified by observing
    • Culture appearance
    • Characteristic microscopical structures
  • Botany down a microscope

Yeast ID

  • Yeasts only vary slightly in appearance
  • Candida albicans usually forms germ tubes
  • Cryptococcus neoformans produces a capsule
  • Structures formed on Corn Meal Agar.
  • Assimilation tests

3. Systemic Mycoses


  1. Dimorphic (Thermally)
  • Also called "true mycoses" and "Endemnic mycoses"
  1. Others
  • Candida
  • Aspergillus
  • Fusairium
  • Rhizopus etc

Colonisation vs Infection

  • Factors predisposing to infection:
    • Antibiotics
    • IVDA
    • Hyperalimenation
  • Polyethylene catheters
  • Neutropenia
  • Qualitative neutrophil defects
  • Depressed humoral immunity

Respiratory Tract


  • Two routes of spread: Endobronchial or haematogenous
  • CXR non-specific: may range from fine nodular, diffuse infiltrates to necrotizing pneumonia.
  • Diagnosis difficult because of high prevalance of yeasts colonizing respiratory tract.

Others

1. Candida (catheter-asc UTI, RE)

Vascular Infections


  1. Candidemia
  • Increasing in recent years, because of use of intravascular devices, better detection methods. Increasingly broader spectrum antibiotics
  1. Cardiac
  • Pericardium, myocardium, endocardium
    • Purulent pericarditis
    • Myocarditis (non - specific ECG changes - SVT, QRS changes mimicking infarction, pronounced T-wave changes)
  1. Endocarditis
  • Predisposing factors :Underlying heart disease, IVDA, cancer chemotherapy, prosthetic valves, prolonged use of intravenous catheters - right - sided endocarditis, superimposed on bacterial endocarditis

Urinary Tract

  • Candiduria is common
  • Antibiotic use, indwelling catheters related
  • Most patients with candiduria and no predisposing factors for systemic candidiasis have good outcome without specific antifungal treatment.
  • Upper tract involvement - kidneys
    • Haematogenous or ascending infection
    • Fungus balls, perinephric abscess, papillary necrosis
    • Liver, spleen, gall-bladder, Peritonitis, Eye, Bone and Joint, CNS, Disseminated

Candidosis (superficial)

  • Mouth/throat; vagina
  • Predisposing factors: infancy, old age, antibiotics, pregnancy
  • Nail infections: wet hands
  • Severe infections in AIDS
    • may be presenting symptom
  • Oral candidosis (thrush), genital thrush
  • Keratitis, corneal ulcers
  • Treatment
    • Anti-fungal eye drop
    • Oral azole

Trichophyton

  • Macroconida: Long, Cylindrical-shaped, 6-8 cells

Trichophyton rubrum


  • Human Skin and Nail disease, Less commonly, hair disease
  • Human to human. Spread through wet floor and direct contact
  • World-wide distribution.Very common in Singapore

Trichophyton mentagraphytes var interdigitale


  • Skin diseases of foot (Hong Kong Foot) and groin.
  • Main source of infection is human
  • Spread on wet surfaces and human to human
    contact
  • World wide. Common in Singapore

Trichophyton mentagraphytes var granulare

  • Human body skin,beard and hair disease
  • Also hair disease of animals
  • Source: Human, domestic and wild animals
  • Worldwide; Occasionally seen in Singapore

Microsporum

  • Boat-shaped,thick-walled with spikes, 4-5 cells

Microsporum canis

  • Human scalp hair infection.
  • Hair infection in dogs and cats
  • Infection acquired from animals. Human to human transmission occurs rarely
  • World-wide. Seen in Singapore

Epidermophyton

  • Club-shaped, arranged in bunches

Epidermophyton floccosum

  • Human groin and foot skin infection. Nail and body occasionally.
  • Does not affect hair
  • Human to human infection. Worldwide. Seen in Singapore.

Lab Diagnosis


  1. Direct Microscopy


    • 30% KOH to dissolve the skin and nail to expose the fungus
    • Examined w/o stain
    • 10x and 40x magnification
    • Fungue: hyphae with septa and spores. All species of fungi appear similar
  2. Culture

  • Sabouroud's Dextrose Agar
  • Primary culture - from skin, hair and nail - done with cyclohgeximide
  • Subculture to look for characteristic features of fungus
  • Anthropophilic spp., Zoophilic spp., Geophilic spp.
  • Techniques of Identification:


    • Rate of growth of colony
    • Nature of mycelium :Aerial and submerged.
    • Colour of pigment produced
    • Type of MACROCONIDIA
    • Type of MICROCONIDIA: Present/not present, share, arrangement
    • Other spores: eg Chlamydospores
    • Features of hypha
    • Special tests
  • Exanination Of Culture


    • Needle mount and scotch tape mount
    • Stained with Lactophenol Cotton Blue satin
    • Examined for Macroconidia, Microconidia
    • Hyphae, Chlamydospores,etc
      • Spiral hypha: Trich. Mentag.
      • Antler hypha: Trich. schoeleini
      • Pectinate hypha: Microsp.rivalieri
      • Hyphal swelling, Chlamydospores
  1. Molecular Diagnosis
  2. Serology
  3. Histology: Gomori Silver Methanamine. Periodic Acid Schiff Stain.

2. Malassezia spp. (only skin)

M furfur
M pacydermatis
M sympodialis
M slooffiae
M obtusa
M restricta
M globosa
M dermatis
M japonica
M yamatoensis
M nana
M caprae
M equina
M cuniculi

Diseases associated with Malassezia


  1. Tinea (Pityriasis) versicolor
  • Commensal in healthy individuals
  • Yeast may be transmitted from human to human
  • Causes diseases in presence of predisposing factors
  • Diagnosis made by Direct microscopy in 30% KOH with Parker's Ink (For staining)
  • M. furfur - “Spaghetti & meat ball”
  • i.e. yeast and mycelial form on skin
  • Culture: yeast form only
  1. Seborhhoeic dermatitis/Dandruff
  2. Malassezia folliculitis/Pityrosporum
  3. Peritonitis and septicemia in neonate

Other clinical symptoms


  1. Tinea nigra (patch of black fungus)
  • Generally affects skin of palms, occ soles
  • Phaeoannellomyces werneckii
  • Asymptomatic brown/black macules; non scaly
  • Microscopy: brown branched septet hyphae & elongated budding cells
  • Rx: topical azoles

  1. Black piedra
  • Confined to hair shafts
  • Piedraia hortae
  • Tropical regions
  • Firmly adherent black hard
    nodules on hairs of scalp; beard, pubic area
  • As fungus grows into hair shaft, it may fracture easily
  • Subcuticular fungal growth > cuticle rupture


    • Fungus grows outside cuticle, completely surrounding hair shaft



Other clinical symptoms cont'


  1. White piedra
  • Confined to hair shafts
    • Scalp: Trichosporon ovoides
    • Crural region: T inkin, asahii, mucoides
  • Soft white or light brown nodules
    • Transparent, easily detachable
  • Commoner on beard, pubic region of scalp
    • Some cases may be sexually transmitted
  • Grows within and outside hair shaft -> may break off easily
  • Synergistic role of Brevibacterium in the infection?
  • Histo: nodules in the form of a sheath which may extend around hair shaft
  • Rx: shaving/cutting hair
  1. Otomycocis
  • Chronic inflamm condition of the external auditory canal caused by fungal infection
  • Aspergillusniger, fumigatus
    • Light growth from swabs taken from ear is of little significance
    • Presenceoflargemasses
  • In immunocompromised, may result in extensive erosions + necrosis
    • May spread to middle ear, mastoids
  1. Keratomycosis (Mycotic keratitis)
  • Posttraumatic / postsurgical Contact lens related corneal inf.
  • Etio: Saprophytic fungi
    • Aspergillus, Fusarium, Alternaria, Candida
  • Clinical findings: Corneal ulcer

3. Nattrasia Mangifera (Scytalidium dimidiatum )


  • Able to invade healthy nail and skin
  • Increasing importance. Not treatable with
    current drugs
  • Direct microscopy: Quite similar to Dermatophytes.
  • Culture: Fast growing,black variety or pale variety

4. Moulds


  • Refered to as Non-Dermatophyte Moulds)
  • Usually causes nail infection
  • Fusarium, Aspergillus, Onychocola etc.

5. Candida


Diseases :

  • Oral (Mouth and tongue)
  • Genital (Vagina, Glans penis)
  • Intertrigo (Axillae,groin, Toe-webs, Finger webs)
  • Finger Nails
  • Candida Paronychia and Onychomycosis
    • Several fingers affected
    • Nail fold red swollen, loss of cuticle, detachment of the nail fold from dorsal surface of nail plate
    • Thick white pus may discharge
    • Tender


  1. Sporotrichosis
  1. Chromoblastomycosis
  1. Mycetoma
  1. Rhinosporidiosis

Sporothrix schenkii


  • Natural habitat: soil,wood splinter, thorns of plants
  • Enter skin by thorn/splinter pricks and during injury/
  • Rare in Singapore
  • Common in Mexico and South Africa esp in Gold and diamond mine
  • Culture: Dimorphic


    • 37°C: Round/cigar-shaped yeast cells
    • 25°C: Septate hyphae, rosette-like clusters of conidia at the tips of the conidiophores

Definition

  • An acute or chronic fungal infection caused by sporothrix schenckii
  • Both temperate/tropical
  • Not contagious (No human to human infection)
  • Systemic sporotrichosis is rare, portal of entry – lung
  • Histo: Granulomatous rxn, asteroid bodies

Clinical Variants

  1. Cutaneous
  • Follows implantation of spores in wounds
  • Exposed skin, upper extremity
  • Nodule/pustule>>>breaks down>>>ulcer
  • Left untreated, involvement of lymphatics, chain of lymphatic nodules develop
  • General health may not be affected



  1. Systemic

Definition

  • A chronic fungal infection of the skin and subcutaneous tissues
  • Caused by pigmented fungi
    • Phialophora verrucosa
    • Fonsecaea pedrosoi
    • F.compacata,
    • Cladophialophora carrion
  • Thick-walled spores, single or multiple clusters in tissue—called sclerotic body or” Copper penny “
  • Slow growing exophytic (warty) skin lesions, usually on the feet.

General and Clinical Features

  • Chronic inf
  • In divers
  • Polypoid masses at nasal mucosa, conjunctiva, genitalia and rectum
  • Seropurulent discharge from nasal lesions



Clinical Features


  • Papules > verrucous cauliflower-like lesions on lower extremities
  • Systemic invasion is very rare
  • Skin disease last for decades

Diagnosis


  1. Direct microscopic examination (KOH)
  • Sclerotic body
  • Copper penny body
  1. Culture
  • Sabouraud dextrose agar, 4-6 weeks, 37°C



Diagnosis

  • Samples: Aspiration fluid, pus, biopsy
  1. Microscopy
  • Direct microscopic examination (KOH), histopathological examination (methenamine silver stain)
  1. Culture
  2. Serology - yeast agglutination test
  3. Sporotrichin skin test

Definition

  • Fungi in soil, plants, rotting vegetation etc
  • Enter subcutaneous tissues during injury
  • Common in tropical climates
  • Causative agents
    • Fungi (Eumycetoma)
    • Actinomyces (Actinomycetoma)

Clinical Features


  • Usu foot/lower leg
  • Firm, painless nodule > appearance of papules/pastules > break down to form draining sinuses containing sulphur granules
  • Purulent pus from multiple tracts/sinuses
  • No significant pain
  • Dissemination: muscles and bones
  • Extension to deeper tissues eg. Periositits, osteomyelitis
  • Advanced cases > destruction of bone with gross deformity



Causative Agents

  • Madurella mycetomatis - Pseudallescheria boydii
  • Acremonium
  • Exophiala jeanselmei
  • Leptosphaeria
  • Aspergillus
  • Actinomyces

Causative agent: Rhinosporidium seeberi

  • Natural reservoir: fish, aquatic insects.
  • Asc with swimming/working in stagnant water
  • Human to human spread unknown

Diagnosis

  • Spherules filled with endospores (in tissue)
  • Has not been cultured in vitro on artificial media

2. Aspergillus

  • KOH preparation on sputum
  • Lung biopsy
  • Aspergillus precipitins (antibody test)
  • Serial measurement of circulating galactomannan

Aspergillosis


  • Keratitis, corneal ulcers - anti-fungal eyedrops
  • Aspergillus species: several different types of disease:
    • Allergic forms
      • Fungus ball (aspergilloma) in lung (forms in cavity) - precipitin test positive
  • Immunocompromised patients: invasive aspergillosis - lung. Hard to diagnose, empirical amphotericin often used
  • Disseminated aspergillosis: brain abscesses
  • Allergic bronchopulmonary aspergillosis
    • Hypersensitivity response to Aspergillus- asthma-like symptoms – cough, wheezing, shortness of breath
  • Invasive aspergillosis
    • Most commonly seen in the lungs, but can disseminate to other tissues including the central nervous system, sinuses, bone, heart, kidney, eye, blood and skin
  • Risk factors for invasive aspergillosis include patients on steroids, chemotherapy treatment resulting in severe neutropenia, stem cell and solid organ transplantation, AIDS

Transmission

  • By airborne spores
  • Lung, sinuses, skin portals, eye, CNS

Factors predisposing to infections

  • Immune suppression e.g. HIV, leukaemia, transplantation
  • Construction activity
  • Diseased lung e.g. old tuberculosis

Features

  • Ubiquitous in the environment. Grows in stored hay or grain, decaying vegetation, soil, dung.


  • Commonly cause infections:


    • A. fumigatus (RTI)
    • A. flavus
    • A. niger
    • A. terreus

Features


  • Ubiquitous
  • Normal commensals of humans - skin, GIT, sputum, female genital tract
  • In soil, hospital environments, inanimate objects, food

True Systemic (Endemic) Mycoses

  • Coccidioidomycosis
  • Histoplasmosis
  • Blastomycosis
  • Paracoccidioidomycosis

General Features

  • Fungi exist in nature. No known host
  • Geographic distribution varies and specific.
  • Inhalation > pulmonary inf. > dissemination
  • No evidence of transmission among humans or animals
  • Healthy individuals are infected.

Human infection

  • Infection during sandstorm.
  • Most healthy individual exposed to fungi will develop transient, lung infection which healed spontaneously.
  • Detected by serological or skin prick test. Small number develop clinical disease.

1. Coccidioidomycosis

Clinical findings


  1. Primary Infection
  • Asymptomatic in most
  • Fever, chest pain, cough, weight loss
  • Nodular lesions in lungs
  1. Secondary (Disseminated) Infection
  • Chronic / fulminant
  • Infection of lungs, meninges, bones and skin

Features


  • A primary respiratory fungal infection Coccidioides immitis
  • Endemic is desert areas of South west USA Mexico, Central and South America.
  • Soil inhabitant, acquired by inhalation of fungus laden dust
  • Lung infections ,usually self healing
  • Primary infection of skin is rare, firm painless
    indurated nodules after trauma
  • Clinical presentation simulates influenza or pul TB

Diagnosis

  • Samples: Sputum, tissue
  1. Direct examination
  • KOH, H&E spherule
  1. Culture
  • SDA: Mould colonies at 25 °C Spherule production in vitro by incubation in an enriched medium at 40°C, 20% CO2

2. Histoplasmosis

Features

  • Highly infectious
  • Mainly respiratory
  • Histoplasma capsulate (Var capsulate, Var duboisii)
  • Intracellular, parasites reticulenodothelial
    system and involving the spleen, liver, CNS
  • Rarely becomes chronic, progressive and fatal


  • Natural reservoir: soil, bat and avian habitats

  • Location: May be prevalent all over the world, but the incidence varies widely (most endemic in Ohio, Mississipi, Kentucky)

Human Infection & Disease

  • Transmitted by inhalation, not from humans to humans or animal to human.

1. Acute pulmonary

  • Uncommon
  • Cough fever. CXR shows diffuse mottling or local infiltration

2. Acute Disseminated

  • Lung consolidation, hepatosplenomegaly, fever,
    anorexia, lymphadenopathy.
  • Indurated Granulomatous ulcers of the mouth, nose, larynx
  • In AIDs, multiple small skin nodules.

3. Chronic pulmonary

  • Closely resembles miliary TB

4. Chronic disseminated

  • Appears months to years after leaving endemic area
  • Commonest presentation- oral ulceration or addison’s disease sec to adrenal infiltration

5. Primary cutaneous

  • Very rare, occurs on inoculation
  • Nodule or indurated ulcer with local lymphadenopathy

3. Blastomyces dermatitidis


Features


  • Location: Widespread in North America. Less common in Isreal, India and other parts of Asia.
  • Natural habitat of fungus not known. Thought to be growing as saprophytes n natue

Blastomycosis


  • Chronic granulomatous and supprative mycosis
  • Blastomyces dermatitis
  • Affects lung primarily, but can be disseminated
  • Rarely isolated in env, natural substrate may be wood debris close to rivers
  • No human to human spread
  • Inhalational
  • 3 clinical forms:

1. Primary cutaneous

  • Very rare, post trauma with fungi introduction
  • 1-2/52 post inoculation, erythematous indurated area with chancre appears
  • Assoc lymphangitis and lymphadenopathy
  • Spontaneous recovery

2. Pulmonary

  • Similar to primary TB
  • Assoc with EN

3. Disseminated

  • Pulmonary, skin, bones, CNS
  • Mucous membrane rarely involved
  • Skin lesion
    • Symmetrical, trunk
    • Initially papule/nodule which may ulcerate and scar
    • Eventually, serpenginous, warty with violaceous margin studded with miliary abscess containing organisms
  • Treatment: Amphotercin B, oral itraconazole

Diagnosis

  • Samples: Sputum, tissue
  1. Direct microscopy
  • KOH, H&E
  • Yeast cells; bud is attached to the parent cell by a broad base
  1. Culture:
  • Mould at 25°C
  • Conversion to yeast on an enriched medium at 37°C

4. Paracoccodiodes brasilienis


  • Location: Central and South America
  • Pathogenesis: Inhalation of spores
  • Microscopy
    • At 37°C (in tissue ): multiply budding yeasts; the buds are attached to the parent cell by a narrow base
    • At 25 °C: hyphae and conidia

Paracoccidioidomycosis Clinical Findings

  • Asymptomatic Inf
  • Latent form (duration variable)
  • Symptomatic Inf:
    • Noduler lesions in lungs
    • Dissemination to other organs (rare)

Paracoccidioidomycosis Diagnosis


  • Samples: Sputum, tissue
  1. Direct microscopy


    • KOH, H&E
    • Multiply budding yeasts; the buds are attached to the parent cell by a narrow base

  2. Culture:


    • Mould at 25°C
    • Conversion to yeast on an enriched medium at 37°C

Systemic candidosis

  • Many predisposing factors e.g.
    • Antibiotics
    • Immunocompromise
    • Surgery
    • Intravascular line
    • Preterm neonates
    • Retina, hepatosplenic

5. Crytpcoccus Yeasts

  • Worldwide distribution
  • Frequently found in excreta of birds esp pigeon.
  • Also in fruits , milk & soil
  • Human acquire fungus through inhalation
  • No spread from human to human.


  • 19 species known


    • C. neofornams var neoformans
    • C. neoformans var gattii.
    • C. albicus
    • C. laurentii

Cryptococcosis

  • Lung: Asymptomatic,Cryptoccoma, Pulmonary infection
  • Brain: Memingitiswith cranial nerve damages - Skin:Granuloma
  • Systemic: Liver, kidney etc


Diagnosis

  • Cryptococcus neoformans (MEN)
    • Gelatinous capsules of yeast cell
    • Indian-ink examination of CSF
    • Mucicarmine stain in tissue section
    • Culture:Yeast at both 26 and 37C, corn meal agar

Treatment

  • For cryptococcus neoformans - Amphotericin + flucytosine. Then maintain on fluconazole

5. Penicillium marneffei

  • Disease: Papules and abscess on skin
  • Disseminated infection in ill patients
  • Common disease in HIV patients.
  • Fungus of Bamboo rats
  • Endemnic in South west China, Vietnam , Thailand

Penicilliosis

  • Penicillum marneffei, causes disseminate mycosis in both health and immunocompromised
  • Originated from soil, confined to SE Asia
  • Presents with Respiratory syms and
    hepatosplenomegaly
  • Cough, malaise, generalized lymphadenopathy, fever, and weight loss, along with the skin lesions, are presenting symptoms.
  • Other commonly affected organs include the lungs (infiltrates or cavities), lymph nodes, liver, spleen, and bone.
  • 50% cases skin lesions Molloscum like lesions or papules/ulcers
  • Fatal if untreated
  • Treatment: IV amphotercin B or itraconazole 200-400mg/day

Clinical Manifestations


  • The diagnosis is established by culture and skin biopsy

Diagnosis


  • Tissue smear: Safety-pin shaped yeast
  • Culture: Dimorphic
  • Characteristic bright red pigment in culture at 26C

Mucor


Mucormycosis

  • Infections of immunocompromised
  • Mucor and related species
  • Rhinocerebralmucor mycosis - fungal infection of sinuses, going backwards close to brain, almost always occuring in ppl with diabetes, presents with ketoacidosis and kidney failure

Trichosporon

  • Trichosporon spp. are basidiomycetous yeast-like fungi found widely in nature.
  • Clinical isolates are generally related to superficial infections.
  • However, this fungus has been recognized as an opportunistic agent of invasive infections, mostly in cancer patients and those exposed to invasive medical procedures
  • Trichosporon species are the second most common cause of fungaemia in patients with haematological malignant disease and are characterised by resistance to amphotericin and echinocandins and poor prognosis.

Sporotrichosis

  • Gardening, baling hay, masonry work
  • Accidents with soil exposure
  • Inhalation
  • Bites and scratches from animals
  • Sporotrichosis: A Case Report and Successful Treatment with Itraconazole

6. Pseudoallescheria boydii/Scedosporium


  • Ubiquitous saprophytic fungus that usually causes cutaneous/subcutaneous infection but may manifest as an invasive disease, often in immunocompromised hosts.
  • The two most common clinical conditions caused by P boydii are mycetoma and respiratory tract involvement by colonization of preformed cavities

12. Pneumocystis jiroveci (carinii)


  • Lung infections in immunocompromised ! Common in AIDS patients
  • Taxonomy obscure for many years ...
  • Molecular taxonomy shows it is a yeast
  • Does not respond to conventional anti fungal drugs
  • Must be visualised (silver stain, IF stain), cannot be cultured