Fungi
2. Deep (Subcutaneous) Fungi
- Usually tropical/subtropical countries
- Environmental fungi
- Sporadic occurring infections
- Directly inoculated into dermis/ epidermis via penetrating injury
- Chronic and deforming
- Some very hard to treat
1. Superficial & Cutaneous Fungi
- Superficial mycoses
- Generally do not provoke a significant histopathological inflammatory
response in the host - e.g. pityriasis versicolor, tinea nigra, black & white pier
- Generally do not provoke a significant histopathological inflammatory
- Cutaneous mycoses
- Although fungus may be confined to the stratum corneum, pathological
changes occur in the host tissue - e.g. dermatophytosis, candidosis, dermatomycoses caused by Scytalidium sp and other non-dermatophyte moulds
- Although fungus may be confined to the stratum corneum, pathological
Other techniques
- Antibody tests: of limited usefulness
- e.g. Aspergillus precipitins
- Antigen tests
- Cryptococcus neoformans (cryptococcal antigen test done on serum or CSF, not on urine)
- Galactomannan antigen assay: screening for
possible Aspergillus infection
- Molecular techniques e.g. PCR
Diseases caused by fungi
- Poisoning etc, Allergy, Infections
Mycotoxins
- Poisonous substances produced by certain fungi
- Poisoning: acute or chronic
- Aflatoxins: liver cancer
Fungal infections: clinical classifications
- Superficial
- Subcutaneous
- Systemic
1. Dermatophytes
- A group of closely related fungi which can utilize keratin and cause infections called Tinea or Ringworm and Athlete s Foot.
- Comprises 3 genera
- Trichophyton
- Microsporum
- Epidermophyton
Characteristics
- Fungi are widespread in the environment
- No chlorophyll
- Absolute need for complex nutrients
- Yeasts (single-cell form) and/or
- Hyphae (filamentous form)
- Teleomorph, Anamorph, Synanamorph, Holomorph
Culture
- Almost all of the medically important fungi grow in culture - Sabouraud Dextrose Agar
- Selective supplements (these inhibit unwanted bacteria) include
- Cycloheximide (but this inhibits some fungi)
- Chloramphenicol (Broad spectrum antibiotic)
Mould ID
- Filamentous fungi are largely identified by observing
- Culture appearance
- Characteristic microscopical structures
- Botany down a microscope
Yeast ID
- Yeasts only vary slightly in appearance
- Candida albicans usually forms germ tubes
- Cryptococcus neoformans produces a capsule
- Structures formed on Corn Meal Agar.
- Assimilation tests
3. Systemic Mycoses
- Dimorphic (Thermally)
- Also called "true mycoses" and "Endemnic mycoses"
- Others
- Candida
- Aspergillus
- Fusairium
- Rhizopus etc
Colonisation vs Infection
- Factors predisposing to infection:
- Antibiotics
- IVDA
- Hyperalimenation
- Polyethylene catheters
- Neutropenia
- Qualitative neutrophil defects
- Depressed humoral immunity
Respiratory Tract
- Two routes of spread: Endobronchial or haematogenous
- CXR non-specific: may range from fine nodular, diffuse infiltrates to necrotizing pneumonia.
- Diagnosis difficult because of high prevalance of yeasts colonizing respiratory tract.
Others
1. Candida (catheter-asc UTI, RE)
Vascular Infections
- Candidemia
- Increasing in recent years, because of use of intravascular devices, better detection methods. Increasingly broader spectrum antibiotics
- Cardiac
- Pericardium, myocardium, endocardium
- Purulent pericarditis
- Myocarditis (non - specific ECG changes - SVT, QRS changes mimicking infarction, pronounced T-wave changes)
- Endocarditis
- Predisposing factors :Underlying heart disease, IVDA, cancer chemotherapy, prosthetic valves, prolonged use of intravenous catheters - right - sided endocarditis, superimposed on bacterial endocarditis
Urinary Tract
- Candiduria is common
- Antibiotic use, indwelling catheters related
- Most patients with candiduria and no predisposing factors for systemic candidiasis have good outcome without specific antifungal treatment.
- Upper tract involvement - kidneys
- Haematogenous or ascending infection
- Fungus balls, perinephric abscess, papillary necrosis
- Liver, spleen, gall-bladder, Peritonitis, Eye, Bone and Joint, CNS, Disseminated
Candidosis (superficial)
- Mouth/throat; vagina
- Predisposing factors: infancy, old age, antibiotics, pregnancy
- Nail infections: wet hands
- Severe infections in AIDS
- may be presenting symptom
- Oral candidosis (thrush), genital thrush
- Keratitis, corneal ulcers
- Treatment
- Anti-fungal eye drop
- Oral azole
Trichophyton
- Macroconida: Long, Cylindrical-shaped, 6-8 cells
Trichophyton rubrum
- Human Skin and Nail disease, Less commonly, hair disease
- Human to human. Spread through wet floor and direct contact
- World-wide distribution.Very common in Singapore
Trichophyton mentagraphytes var interdigitale
- Skin diseases of foot (Hong Kong Foot) and groin.
- Main source of infection is human
- Spread on wet surfaces and human to human
contact - World wide. Common in Singapore
Trichophyton mentagraphytes var granulare
- Human body skin,beard and hair disease
- Also hair disease of animals
- Source: Human, domestic and wild animals
- Worldwide; Occasionally seen in Singapore
Microsporum
- Boat-shaped,thick-walled with spikes, 4-5 cells
Microsporum canis
- Human scalp hair infection.
- Hair infection in dogs and cats
- Infection acquired from animals. Human to human transmission occurs rarely
- World-wide. Seen in Singapore
Epidermophyton
- Club-shaped, arranged in bunches
Epidermophyton floccosum
- Human groin and foot skin infection. Nail and body occasionally.
- Does not affect hair
- Human to human infection. Worldwide. Seen in Singapore.
Lab Diagnosis
Direct Microscopy
- 30% KOH to dissolve the skin and nail to expose the fungus
- Examined w/o stain
- 10x and 40x magnification
- Fungue: hyphae with septa and spores. All species of fungi appear similar
Culture
- Sabouroud's Dextrose Agar
- Primary culture - from skin, hair and nail - done with cyclohgeximide
- Subculture to look for characteristic features of fungus
- Anthropophilic spp., Zoophilic spp., Geophilic spp.
Techniques of Identification:
- Rate of growth of colony
- Nature of mycelium :Aerial and submerged.
- Colour of pigment produced
- Type of MACROCONIDIA
- Type of MICROCONIDIA: Present/not present, share, arrangement
- Other spores: eg Chlamydospores
- Features of hypha
- Special tests
Exanination Of Culture
- Needle mount and scotch tape mount
- Stained with Lactophenol Cotton Blue satin
- Examined for Macroconidia, Microconidia
- Hyphae, Chlamydospores,etc
- Spiral hypha: Trich. Mentag.
- Antler hypha: Trich. schoeleini
- Pectinate hypha: Microsp.rivalieri
- Hyphal swelling, Chlamydospores
- Molecular Diagnosis
- Serology
- Histology: Gomori Silver Methanamine. Periodic Acid Schiff Stain.
2. Malassezia spp. (only skin)
M furfur
M pacydermatis
M sympodialis
M slooffiae
M obtusa
M restricta
M globosa
M dermatis
M japonica
M yamatoensis
M nana
M caprae
M equina
M cuniculi
Diseases associated with Malassezia
- Tinea (Pityriasis) versicolor
- Commensal in healthy individuals
- Yeast may be transmitted from human to human
- Causes diseases in presence of predisposing factors
- Diagnosis made by Direct microscopy in 30% KOH with Parker's Ink (For staining)
- M. furfur - “Spaghetti & meat ball”
- i.e. yeast and mycelial form on skin
- Culture: yeast form only
- Seborhhoeic dermatitis/Dandruff
- Malassezia folliculitis/Pityrosporum
- Peritonitis and septicemia in neonate
Other clinical symptoms
- Tinea nigra (patch of black fungus)
- Generally affects skin of palms, occ soles
- Phaeoannellomyces werneckii
- Asymptomatic brown/black macules; non scaly
- Microscopy: brown branched septet hyphae & elongated budding cells
- Rx: topical azoles
- Black piedra
- Confined to hair shafts
- Piedraia hortae
- Tropical regions
- Firmly adherent black hard
nodules on hairs of scalp; beard, pubic area - As fungus grows into hair shaft, it may fracture easily
Subcuticular fungal growth > cuticle rupture
- Fungus grows outside cuticle, completely surrounding hair shaft
- Fungus grows outside cuticle, completely surrounding hair shaft
Other clinical symptoms cont'
- White piedra
- Confined to hair shafts
- Scalp: Trichosporon ovoides
- Crural region: T inkin, asahii, mucoides
- Soft white or light brown nodules
- Transparent, easily detachable
- Commoner on beard, pubic region of scalp
- Some cases may be sexually transmitted
- Grows within and outside hair shaft -> may break off easily
- Synergistic role of Brevibacterium in the infection?
- Histo: nodules in the form of a sheath which may extend around hair shaft
- Rx: shaving/cutting hair
- Otomycocis
- Chronic inflamm condition of the external auditory canal caused by fungal infection
- Aspergillusniger, fumigatus
- Light growth from swabs taken from ear is of little significance
- Presenceoflargemasses
- In immunocompromised, may result in extensive erosions + necrosis
- May spread to middle ear, mastoids
- May spread to middle ear, mastoids
- Keratomycosis (Mycotic keratitis)
- Posttraumatic / postsurgical Contact lens related corneal inf.
- Etio: Saprophytic fungi
- Aspergillus, Fusarium, Alternaria, Candida
- Clinical findings: Corneal ulcer
3. Nattrasia Mangifera (Scytalidium dimidiatum )
- Able to invade healthy nail and skin
- Increasing importance. Not treatable with
current drugs - Direct microscopy: Quite similar to Dermatophytes.
- Culture: Fast growing,black variety or pale variety
4. Moulds
- Refered to as Non-Dermatophyte Moulds)
- Usually causes nail infection
- Fusarium, Aspergillus, Onychocola etc.
5. Candida
Diseases :
- Oral (Mouth and tongue)
- Genital (Vagina, Glans penis)
- Intertrigo (Axillae,groin, Toe-webs, Finger webs)
- Finger Nails
- Candida Paronychia and Onychomycosis
- Several fingers affected
- Nail fold red swollen, loss of cuticle, detachment of the nail fold from dorsal surface of nail plate
- Thick white pus may discharge
- Tender
- Sporotrichosis
- Chromoblastomycosis
- Mycetoma
- Rhinosporidiosis
Sporothrix schenkii
- Natural habitat: soil,wood splinter, thorns of plants
- Enter skin by thorn/splinter pricks and during injury/
- Rare in Singapore
- Common in Mexico and South Africa esp in Gold and diamond mine
Culture: Dimorphic
- 37°C: Round/cigar-shaped yeast cells
- 25°C: Septate hyphae, rosette-like clusters of conidia at the tips of the conidiophores
Definition
- An acute or chronic fungal infection caused by sporothrix schenckii
- Both temperate/tropical
- Not contagious (No human to human infection)
- Systemic sporotrichosis is rare, portal of entry – lung
- Histo: Granulomatous rxn, asteroid bodies
Clinical Variants
- Cutaneous
- Follows implantation of spores in wounds
- Exposed skin, upper extremity
- Nodule/pustule>>>breaks down>>>ulcer
- Left untreated, involvement of lymphatics, chain of lymphatic nodules develop
- General health may not be affected
- Systemic
Definition
- A chronic fungal infection of the skin and subcutaneous tissues
- Caused by pigmented fungi
- Phialophora verrucosa
- Fonsecaea pedrosoi
- F.compacata,
- Cladophialophora carrion
- Thick-walled spores, single or multiple clusters in tissue—called sclerotic body or” Copper penny “
- Slow growing exophytic (warty) skin lesions, usually on the feet.
General and Clinical Features
- Chronic inf
- In divers
- Polypoid masses at nasal mucosa, conjunctiva, genitalia and rectum
Seropurulent discharge from nasal lesions
Clinical Features
- Papules > verrucous cauliflower-like lesions on lower extremities
- Systemic invasion is very rare
- Skin disease last for decades
Diagnosis
- Direct microscopic examination (KOH)
- Sclerotic body
- Copper penny body
- Culture
Sabouraud dextrose agar, 4-6 weeks, 37°C
Diagnosis
- Samples: Aspiration fluid, pus, biopsy
- Microscopy
- Direct microscopic examination (KOH), histopathological examination (methenamine silver stain)
- Culture
- Serology - yeast agglutination test
- Sporotrichin skin test
Definition
- Fungi in soil, plants, rotting vegetation etc
- Enter subcutaneous tissues during injury
- Common in tropical climates
- Causative agents
- Fungi (Eumycetoma)
- Actinomyces (Actinomycetoma)
Clinical Features
- Usu foot/lower leg
- Firm, painless nodule > appearance of papules/pastules > break down to form draining sinuses containing sulphur granules
- Purulent pus from multiple tracts/sinuses
- No significant pain
- Dissemination: muscles and bones
- Extension to deeper tissues eg. Periositits, osteomyelitis
Advanced cases > destruction of bone with gross deformity
Causative Agents
- Madurella mycetomatis - Pseudallescheria boydii
- Acremonium
- Exophiala jeanselmei
- Leptosphaeria
- Aspergillus
- Actinomyces
Causative agent: Rhinosporidium seeberi
- Natural reservoir: fish, aquatic insects.
- Asc with swimming/working in stagnant water
- Human to human spread unknown
Diagnosis
- Spherules filled with endospores (in tissue)
- Has not been cultured in vitro on artificial media
2. Aspergillus
- KOH preparation on sputum
- Lung biopsy
- Aspergillus precipitins (antibody test)
- Serial measurement of circulating galactomannan
Aspergillosis
- Keratitis, corneal ulcers - anti-fungal eyedrops
- Aspergillus species: several different types of disease:
- Allergic forms
- Fungus ball (aspergilloma) in lung (forms in cavity) - precipitin test positive
- Allergic forms
- Immunocompromised patients: invasive aspergillosis - lung. Hard to diagnose, empirical amphotericin often used
- Disseminated aspergillosis: brain abscesses
- Allergic bronchopulmonary aspergillosis
- Hypersensitivity response to Aspergillus- asthma-like symptoms – cough, wheezing, shortness of breath
- Invasive aspergillosis
- Most commonly seen in the lungs, but can disseminate to other tissues including the central nervous system, sinuses, bone, heart, kidney, eye, blood and skin
- Risk factors for invasive aspergillosis include patients on steroids, chemotherapy treatment resulting in severe neutropenia, stem cell and solid organ transplantation, AIDS
Transmission
- By airborne spores
- Lung, sinuses, skin portals, eye, CNS
Factors predisposing to infections
- Immune suppression e.g. HIV, leukaemia, transplantation
- Construction activity
- Diseased lung e.g. old tuberculosis
Features
Ubiquitous in the environment. Grows in stored hay or grain, decaying vegetation, soil, dung.
Commonly cause infections:
- A. fumigatus (RTI)
- A. flavus
- A. niger
- A. terreus
Features
- Ubiquitous
- Normal commensals of humans - skin, GIT, sputum, female genital tract
- In soil, hospital environments, inanimate objects, food
True Systemic (Endemic) Mycoses
- Coccidioidomycosis
- Histoplasmosis
- Blastomycosis
- Paracoccidioidomycosis
General Features
- Fungi exist in nature. No known host
- Geographic distribution varies and specific.
- Inhalation > pulmonary inf. > dissemination
- No evidence of transmission among humans or animals
- Healthy individuals are infected.
Human infection
- Infection during sandstorm.
- Most healthy individual exposed to fungi will develop transient, lung infection which healed spontaneously.
- Detected by serological or skin prick test. Small number develop clinical disease.
1. Coccidioidomycosis
Clinical findings
- Primary Infection
- Asymptomatic in most
- Fever, chest pain, cough, weight loss
- Nodular lesions in lungs
- Secondary (Disseminated) Infection
- Chronic / fulminant
- Infection of lungs, meninges, bones and skin
Features
- A primary respiratory fungal infection Coccidioides immitis
- Endemic is desert areas of South west USA Mexico, Central and South America.
- Soil inhabitant, acquired by inhalation of fungus laden dust
- Lung infections ,usually self healing
- Primary infection of skin is rare, firm painless
indurated nodules after trauma - Clinical presentation simulates influenza or pul TB
Diagnosis
- Samples: Sputum, tissue
- Direct examination
- KOH, H&E spherule
- Culture
- SDA: Mould colonies at 25 °C Spherule production in vitro by incubation in an enriched medium at 40°C, 20% CO2
2. Histoplasmosis
Features
- Highly infectious
- Mainly respiratory
- Histoplasma capsulate (Var capsulate, Var duboisii)
- Intracellular, parasites reticulenodothelial
system and involving the spleen, liver, CNS Rarely becomes chronic, progressive and fatal
Natural reservoir: soil, bat and avian habitats
- Location: May be prevalent all over the world, but the incidence varies widely (most endemic in Ohio, Mississipi, Kentucky)
Human Infection & Disease
- Transmitted by inhalation, not from humans to humans or animal to human.
1. Acute pulmonary
- Uncommon
- Cough fever. CXR shows diffuse mottling or local infiltration
2. Acute Disseminated
- Lung consolidation, hepatosplenomegaly, fever,
anorexia, lymphadenopathy. - Indurated Granulomatous ulcers of the mouth, nose, larynx
- In AIDs, multiple small skin nodules.
3. Chronic pulmonary
- Closely resembles miliary TB
4. Chronic disseminated
- Appears months to years after leaving endemic area
- Commonest presentation- oral ulceration or addison’s disease sec to adrenal infiltration
5. Primary cutaneous
- Very rare, occurs on inoculation
- Nodule or indurated ulcer with local lymphadenopathy
3. Blastomyces dermatitidis
Features
- Location: Widespread in North America. Less common in Isreal, India and other parts of Asia.
- Natural habitat of fungus not known. Thought to be growing as saprophytes n natue
Blastomycosis
- Chronic granulomatous and supprative mycosis
- Blastomyces dermatitis
- Affects lung primarily, but can be disseminated
- Rarely isolated in env, natural substrate may be wood debris close to rivers
- No human to human spread
- Inhalational
- 3 clinical forms:
1. Primary cutaneous
- Very rare, post trauma with fungi introduction
- 1-2/52 post inoculation, erythematous indurated area with chancre appears
- Assoc lymphangitis and lymphadenopathy
- Spontaneous recovery
2. Pulmonary
- Similar to primary TB
- Assoc with EN
3. Disseminated
- Pulmonary, skin, bones, CNS
- Mucous membrane rarely involved
- Skin lesion
- Symmetrical, trunk
- Initially papule/nodule which may ulcerate and scar
- Eventually, serpenginous, warty with violaceous margin studded with miliary abscess containing organisms
- Treatment: Amphotercin B, oral itraconazole
Diagnosis
- Samples: Sputum, tissue
- Direct microscopy
- KOH, H&E
- Yeast cells; bud is attached to the parent cell by a broad base
- Culture:
- Mould at 25°C
- Conversion to yeast on an enriched medium at 37°C
4. Paracoccodiodes brasilienis
- Location: Central and South America
- Pathogenesis: Inhalation of spores
- Microscopy
- At 37°C (in tissue ): multiply budding yeasts; the buds are attached to the parent cell by a narrow base
- At 25 °C: hyphae and conidia
Paracoccidioidomycosis Clinical Findings
- Asymptomatic Inf
- Latent form (duration variable)
- Symptomatic Inf:
- Noduler lesions in lungs
- Dissemination to other organs (rare)
Paracoccidioidomycosis Diagnosis
- Samples: Sputum, tissue
Direct microscopy
- KOH, H&E
- Multiply budding yeasts; the buds are attached to the parent cell by a narrow base
Culture:
- Mould at 25°C
- Conversion to yeast on an enriched medium at 37°C
Systemic candidosis
- Many predisposing factors e.g.
- Antibiotics
- Immunocompromise
- Surgery
- Intravascular line
- Preterm neonates
- Retina, hepatosplenic
5. Crytpcoccus Yeasts
- Worldwide distribution
- Frequently found in excreta of birds esp pigeon.
- Also in fruits , milk & soil
- Human acquire fungus through inhalation
No spread from human to human.
19 species known
- C. neofornams var neoformans
- C. neoformans var gattii.
- C. albicus
- C. laurentii
Cryptococcosis
- Lung: Asymptomatic,Cryptoccoma, Pulmonary infection
- Brain: Memingitiswith cranial nerve damages - Skin:Granuloma
- Systemic: Liver, kidney etc
Diagnosis
- Cryptococcus neoformans (MEN)
- Gelatinous capsules of yeast cell
- Indian-ink examination of CSF
- Mucicarmine stain in tissue section
- Culture:Yeast at both 26 and 37C, corn meal agar
Treatment
- For cryptococcus neoformans - Amphotericin + flucytosine. Then maintain on fluconazole
5. Penicillium marneffei
- Disease: Papules and abscess on skin
- Disseminated infection in ill patients
- Common disease in HIV patients.
- Fungus of Bamboo rats
- Endemnic in South west China, Vietnam , Thailand
Penicilliosis
- Penicillum marneffei, causes disseminate mycosis in both health and immunocompromised
- Originated from soil, confined to SE Asia
- Presents with Respiratory syms and
hepatosplenomegaly - Cough, malaise, generalized lymphadenopathy, fever, and weight loss, along with the skin lesions, are presenting symptoms.
- Other commonly affected organs include the lungs (infiltrates or cavities), lymph nodes, liver, spleen, and bone.
- 50% cases skin lesions Molloscum like lesions or papules/ulcers
- Fatal if untreated
- Treatment: IV amphotercin B or itraconazole 200-400mg/day
Clinical Manifestations
- The diagnosis is established by culture and skin biopsy
Diagnosis
- Tissue smear: Safety-pin shaped yeast
- Culture: Dimorphic
- Characteristic bright red pigment in culture at 26C
Mucor
Mucormycosis
- Infections of immunocompromised
- Mucor and related species
- Rhinocerebralmucor mycosis - fungal infection of sinuses, going backwards close to brain, almost always occuring in ppl with diabetes, presents with ketoacidosis and kidney failure
Trichosporon
- Trichosporon spp. are basidiomycetous yeast-like fungi found widely in nature.
- Clinical isolates are generally related to superficial infections.
- However, this fungus has been recognized as an opportunistic agent of invasive infections, mostly in cancer patients and those exposed to invasive medical procedures
- Trichosporon species are the second most common cause of fungaemia in patients with haematological malignant disease and are characterised by resistance to amphotericin and echinocandins and poor prognosis.
Sporotrichosis
- Gardening, baling hay, masonry work
- Accidents with soil exposure
- Inhalation
- Bites and scratches from animals
- Sporotrichosis: A Case Report and Successful Treatment with Itraconazole
6. Pseudoallescheria boydii/Scedosporium
- Ubiquitous saprophytic fungus that usually causes cutaneous/subcutaneous infection but may manifest as an invasive disease, often in immunocompromised hosts.
- The two most common clinical conditions caused by P boydii are mycetoma and respiratory tract involvement by colonization of preformed cavities
12. Pneumocystis jiroveci (carinii)
- Lung infections in immunocompromised ! Common in AIDS patients
- Taxonomy obscure for many years ...
- Molecular taxonomy shows it is a yeast
- Does not respond to conventional anti fungal drugs
- Must be visualised (silver stain, IF stain), cannot be cultured